Genome-wide identification of the URGT gene family in cotton and its expression analysis in anthers
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投稿时间:2026-04-23  修订日期:2026-07-08
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Key Words: Cotton  URGT gene family  anther development  expression analysis
作者单位邮编
葛增智 中国农业科学院棉花研究所/棉花生物育种与综合利用全国重点实验室 455000
程孟文 浙江农林大学现代农学院 
韩继委 新疆维吾尔自治区种业发展中心/新疆维吾尔自治区海南良种繁育工作站 
马俐娜 中国农业科学院棉花研究所/棉花生物育种与综合利用全国重点实验室 
范术丽 中国农业科学院棉花研究所/棉花生物育种与综合利用全国重点实验室 
马启峰 中国农业科学院棉花研究所/棉花生物育种与综合利用全国重点实验室 
乔凯凯* 中国农业科学院棉花研究所/棉花生物育种与综合利用全国重点实验室 455000
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Abstract:
      Nucleotide sugar transporters (NSTs) participate in cell wall formation and anther development by transporting substrates into the Golgi apparatus, but the URGT (UDP-rhamnose/UDP-galactose transporter) subfamily in cotton has not been systematically characterized. In this study, a total of 39 URGT genes were identified in Gossypium arboreum, G. raimondii, G. hirsutum and G. barbadense using bioinformatics analysis. We further analyzed their gene characteristics, chromosomal localization, phylogeny, collinearity, cis-acting elements, gene structure, conserved motifs, transcriptome data, and expression patterns during different anther developmental stages. The results showed that URGT genes in cotton could be divided into three subgroups. Gene structure and conserved motif analyses revealed that they were relatively conserved during evolution. Segmental duplication was the main driving force for the expansion of this gene family. Ka/Ks analysis indicated that the evolution of URGT genes was mainly governed by purifying selection. Promoter cis-element analysis revealed that they were abundant in ABA/JA hormone-responsive elements and MYB transcription factor binding sites. Transcriptome analysis showed that the expression of URGT genes varied significantly across different tissues in G. hirsutum. Among them, GhURGT1-6 and GhURGT1-11 exhibited specifically high expression in stamens. Transcriptome and qRT-PCR analyses at different anther developmental stages further revealed that these two genes were highly expressed at the meiosis stage and pollen maturation stage. These results lay a foundation for further functional research of the URGT family during cotton anther development.